PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA009622-PA
Common NameOsI_13945
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 263aa    MW: 27873.7 Da    PI: 6.9662
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA009622-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.73.2e-11144191455
                       HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       +h+ +Er RR++i +++  L++l+P +    +k   Ka++L + ++YI+ Lq
  BGIOSGA009622-PA 144 SHSLAERARREKISERMKILQDLVPGC----NKVIGKASVLDEIINYIQALQ 191
                       8*************************9....677*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.37E-10138195No hitNo description
SuperFamilySSF474594.32E-18138207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.221140190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-18140208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-8144191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-11146196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048446Biological Processpetal morphogenesis
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MDPAPTLAAE LWRTPYLGGG GGGGGGGRGL EAAASGVTEQ SNGSRGGGGG GGAGRRRQRE  60
APALEDDSSR IVSTSGGGGG GQDLTDSEAK RFKASKSDNS SLRTEAETDS RNASKSGDQN  120
PPPPEPPKQD YIHVRARRGQ ATDSHSLAER ARREKISERM KILQDLVPGC NKVIGKASVL  180
DEIINYIQAL QRQVEFLSMK LEAVNAHVNN GIEAFPPKDF GAQVYNTAPG LTFDPQTPRE  240
YAQGSTPSEW LHMQIGGTYE RVT
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.335440.0flower| panicle| seed
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329480640.0
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00207DAPTransfer from AT1G59640Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1001770.0AK100177.1 Oryza sativa Japonica Group cDNA clone:J023029J10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629323.11e-156PREDICTED: transcription factor bHLH79
SwissprotQ0JXE78e-60BPE_ARATH; Transcription factor BPE
TrEMBLA2XN140.0A2XN14_ORYSI; Putative uncharacterized protein
STRINGBGIOSGA009622-PA0.0(Oryza sativa Indica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30653577
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59640.17e-72BIG PETAL P